Re-run this search with the SEG filter switched off
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= CPAR2_601830
(137 letters)
Database: Seq/AA.fsa
85,676 sequences; 40,655,052 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
CORT0F02820 c6 complement(578218..578589,578964..579005) [414 bp... 275 1e-96 CPAR2_601830 Chr6 complement(433820..434191,434538..434579) [414... 275 1e-96 orf19.3504 Chr6 complement(425041..425412,425928..425969) [414 b... 272 1e-95 LELG_04811 c7 (539587..539628,540229..540600) [414 bp, 137 aa] 271 4e-95 CTRG_02906 c3 complement(1942953..1943324,1943760..1943801) [414... 270 1e-94 CAWG_05159 c7 (617572..617617,618133..618500) [414 bp, 137 aa] 270 1e-94 SPAPADRAFT_63277 c7 complement(438168..438539,438910..438951) [4... 270 2e-94 PICST_89371 Chr4 complement(455461..455832,456303..456344) [414 ... 269 3e-94 PGUG_05105 c6 complement(900610..901023) [414 bp, 137 aa] 266 3e-93 clus_CGOB_00022 c4 complement(1146644..1147015,1147227..1147268)... 261 3e-91 DEHA2C04884g Chr3 (444246..444287,444544..444915) [414 bp, 137 a... 261 4e-91 YER117W Chr5 (396765..396806,397278..397649) [414 bp, 137 aa] Pr... 252 1e-87 YBL087C Chr2 complement(59818..60189,60694..60735) [414 bp, 137 ... 252 1e-87 CANTEDRAFT_121943 c15 (598717..598746,599043..599414) [402 bp, 1... 252 1e-87 CD36_62220 Chr6 complement(438921..439292,439791..439796) [378 b... 248 2e-86 PICST_89472 Chr5 complement(1698773..1699171) [399 bp, 132 aa] p... 67 2e-14 CTRG_05235 c8 complement(11738..12136) [399 bp, 132 aa] 66 3e-14 CORT0E04890 c5 (1100060..1100470) [411 bp, 136 aa] S. cerevisiae... 66 4e-14 CPAR2_302710 Chr3 (660989..661402) [414 bp, 137 aa] S. cerevisia... 65 6e-14 SPAPADRAFT_60997 c4 (16426..16815) [390 bp, 129 aa] 64 2e-13 LELG_03861 c5 (513468..513875) [408 bp, 135 aa] 64 3e-13 CAWG_04408 c6 complement(6665..7063) [399 bp, 132 aa] 64 3e-13 orf19.5684 Chr5 complement(15077..15475) [399 bp, 132 aa] Predic... 64 3e-13 CD36_50160 Chr5 complement(30040..30438) [399 bp, 132 aa] Simil... 64 3e-13 CANTEDRAFT_103580 c9 complement(295023..295421) [399 bp, 132 aa] 59 2e-11 CLUG_05805 c8 complement(463602..464000) [399 bp, 132 aa] 58 5e-11 DEHA2B10296g Chr2 complement(812131..812529) [399 bp, 132 aa] hi... 54 2e-09 PGUG_01682 c2 (884488..884886) [399 bp, 132 aa] 52 7e-09 CLUG_03431 c4 complement(501737..503080) [1344 bp, 447 aa] 31 0.55 DEHA2D02926g Chr4 complement(249655..250923) [1269 bp, 422 aa] s... 28 7.5
>CORT0F02820 c6 complement(578218..578589,578964..579005) [414 bp, 137 aa]
putative ribosomal protein
Length = 137
Score = 275 bits (702), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 137/137 (100%), Positives = 137/137 (100%)
Query: 1 MSGSGASGNKFRMSLALPVGAVMNCADNSGARNLYVLAVKGTGARLNRLPAASAGDMVMA 60
MSGSGASGNKFRMSLALPVGAVMNCADNSGARNLYVLAVKGTGARLNRLPAASAGDMVMA
Sbjct: 1 MSGSGASGNKFRMSLALPVGAVMNCADNSGARNLYVLAVKGTGARLNRLPAASAGDMVMA 60
Query: 61 TVKKGKPELRKKVMPAIVVRQAKPWRRRDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK 120
TVKKGKPELRKKVMPAIVVRQAKPWRRRDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK
Sbjct: 61 TVKKGKPELRKKVMPAIVVRQAKPWRRRDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK 120
Query: 121 ECADLWPRIASNSGVVV 137
ECADLWPRIASNSGVVV
Sbjct: 121 ECADLWPRIASNSGVVV 137
>CPAR2_601830 Chr6 complement(433820..434191,434538..434579) [414 bp, 137 aa]
Putaive ribosomal protein
Length = 137
Score = 275 bits (702), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 137/137 (100%), Positives = 137/137 (100%)
Query: 1 MSGSGASGNKFRMSLALPVGAVMNCADNSGARNLYVLAVKGTGARLNRLPAASAGDMVMA 60
MSGSGASGNKFRMSLALPVGAVMNCADNSGARNLYVLAVKGTGARLNRLPAASAGDMVMA
Sbjct: 1 MSGSGASGNKFRMSLALPVGAVMNCADNSGARNLYVLAVKGTGARLNRLPAASAGDMVMA 60
Query: 61 TVKKGKPELRKKVMPAIVVRQAKPWRRRDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK 120
TVKKGKPELRKKVMPAIVVRQAKPWRRRDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK
Sbjct: 61 TVKKGKPELRKKVMPAIVVRQAKPWRRRDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK 120
Query: 121 ECADLWPRIASNSGVVV 137
ECADLWPRIASNSGVVV
Sbjct: 121 ECADLWPRIASNSGVVV 137
>orf19.3504 Chr6 complement(425041..425412,425928..425969) [414 bp, 137 aa]
Putative ribosomal protein; genes encoding cytoplasmic
ribosomal subunits, translation factors, and tRNA
synthetases are downregulated upon phagocytosis by
murine macrophage
Length = 137
Score = 272 bits (695), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 134/137 (97%), Positives = 137/137 (100%)
Query: 1 MSGSGASGNKFRMSLALPVGAVMNCADNSGARNLYVLAVKGTGARLNRLPAASAGDMVMA 60
MSGSGASGNKFRMSLALPVGAVMNCADNSGARNLYVLAVKGTGARLNRLPAA+AGDMVMA
Sbjct: 1 MSGSGASGNKFRMSLALPVGAVMNCADNSGARNLYVLAVKGTGARLNRLPAAAAGDMVMA 60
Query: 61 TVKKGKPELRKKVMPAIVVRQAKPWRRRDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK 120
TVKKGKPELRKKVMPAIV+RQ+KPWRRRDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK
Sbjct: 61 TVKKGKPELRKKVMPAIVIRQSKPWRRRDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK 120
Query: 121 ECADLWPRIASNSGVVV 137
ECADLWPRIASNSGVVV
Sbjct: 121 ECADLWPRIASNSGVVV 137
>LELG_04811 c7 (539587..539628,540229..540600) [414 bp, 137 aa]
Length = 137
Score = 271 bits (692), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 133/137 (97%), Positives = 136/137 (99%)
Query: 1 MSGSGASGNKFRMSLALPVGAVMNCADNSGARNLYVLAVKGTGARLNRLPAASAGDMVMA 60
MSGSGASGNKFRMSLALPVGA+MNCADNSGARNLYVLAVKG GARLNRLPAASAGDMVMA
Sbjct: 1 MSGSGASGNKFRMSLALPVGAIMNCADNSGARNLYVLAVKGVGARLNRLPAASAGDMVMA 60
Query: 61 TVKKGKPELRKKVMPAIVVRQAKPWRRRDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK 120
TVKKGKPELRKKVMPAIV+RQ+KPWRRRDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK
Sbjct: 61 TVKKGKPELRKKVMPAIVIRQSKPWRRRDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK 120
Query: 121 ECADLWPRIASNSGVVV 137
ECADLWPRIASNSGVVV
Sbjct: 121 ECADLWPRIASNSGVVV 137
>CTRG_02906 c3 complement(1942953..1943324,1943760..1943801) [414 bp, 137 aa]
Length = 137
Score = 270 bits (690), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 133/137 (97%), Positives = 136/137 (99%)
Query: 1 MSGSGASGNKFRMSLALPVGAVMNCADNSGARNLYVLAVKGTGARLNRLPAASAGDMVMA 60
MSGSGASGNKFRMSLALPVGAVMNCADNSGARNLYVLAVKG GARLNRLPAA+AGDMVMA
Sbjct: 1 MSGSGASGNKFRMSLALPVGAVMNCADNSGARNLYVLAVKGVGARLNRLPAAAAGDMVMA 60
Query: 61 TVKKGKPELRKKVMPAIVVRQAKPWRRRDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK 120
TVKKGKPELRKKVMPAIV+RQ+KPWRRRDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK
Sbjct: 61 TVKKGKPELRKKVMPAIVIRQSKPWRRRDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK 120
Query: 121 ECADLWPRIASNSGVVV 137
ECADLWPRIASNSGVVV
Sbjct: 121 ECADLWPRIASNSGVVV 137
>CAWG_05159 c7 (617572..617617,618133..618500) [414 bp, 137 aa]
Length = 137
Score = 270 bits (689), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 132/137 (96%), Positives = 137/137 (100%)
Query: 1 MSGSGASGNKFRMSLALPVGAVMNCADNSGARNLYVLAVKGTGARLNRLPAASAGDMVMA 60
MSGSGASGNKFRMS++LPVGAVMNCADNSGARNLYVLAVKGTGARLNRLPAA+AGDMVMA
Sbjct: 1 MSGSGASGNKFRMSVSLPVGAVMNCADNSGARNLYVLAVKGTGARLNRLPAAAAGDMVMA 60
Query: 61 TVKKGKPELRKKVMPAIVVRQAKPWRRRDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK 120
TVKKGKPELRKKVMPAIV+RQ+KPWRRRDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK
Sbjct: 61 TVKKGKPELRKKVMPAIVIRQSKPWRRRDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK 120
Query: 121 ECADLWPRIASNSGVVV 137
ECADLWPRIASNSGVVV
Sbjct: 121 ECADLWPRIASNSGVVV 137
>SPAPADRAFT_63277 c7 complement(438168..438539,438910..438951) [414 bp, 137 aa]
Length = 137
Score = 270 bits (689), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 132/137 (96%), Positives = 136/137 (99%)
Query: 1 MSGSGASGNKFRMSLALPVGAVMNCADNSGARNLYVLAVKGTGARLNRLPAASAGDMVMA 60
MSGSGASGNKFRMSLALPVGA+MNCADNSGARNLYVLAVKG GARLNRLPAASAGDMVMA
Sbjct: 1 MSGSGASGNKFRMSLALPVGAIMNCADNSGARNLYVLAVKGIGARLNRLPAASAGDMVMA 60
Query: 61 TVKKGKPELRKKVMPAIVVRQAKPWRRRDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK 120
TVKKGKPELRKKVMPAIV+RQ+KPWRR+DGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK
Sbjct: 61 TVKKGKPELRKKVMPAIVIRQSKPWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK 120
Query: 121 ECADLWPRIASNSGVVV 137
ECADLWPRIASNSGVVV
Sbjct: 121 ECADLWPRIASNSGVVV 137
>PICST_89371 Chr4 complement(455461..455832,456303..456344) [414 bp, 137 aa]
predicted protein
Length = 137
Score = 269 bits (687), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 132/137 (96%), Positives = 136/137 (99%)
Query: 1 MSGSGASGNKFRMSLALPVGAVMNCADNSGARNLYVLAVKGTGARLNRLPAASAGDMVMA 60
MSGSGASGNKFRMSLALPVGAVMNCADNSGARNLYVLAVKG GARLNRLPAASAGDMVMA
Sbjct: 1 MSGSGASGNKFRMSLALPVGAVMNCADNSGARNLYVLAVKGVGARLNRLPAASAGDMVMA 60
Query: 61 TVKKGKPELRKKVMPAIVVRQAKPWRRRDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK 120
TVKKGKPELRKKVMPAIV+RQ++PWRR+DGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK
Sbjct: 61 TVKKGKPELRKKVMPAIVIRQSRPWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK 120
Query: 121 ECADLWPRIASNSGVVV 137
ECADLWPRIASNSGVVV
Sbjct: 121 ECADLWPRIASNSGVVV 137
>PGUG_05105 c6 complement(900610..901023) [414 bp, 137 aa]
Length = 137
Score = 266 bits (680), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 132/137 (96%), Positives = 134/137 (97%)
Query: 1 MSGSGASGNKFRMSLALPVGAVMNCADNSGARNLYVLAVKGTGARLNRLPAASAGDMVMA 60
MSGSGASGNKFRMSLALP GAVMNC DNSGARNLYVLAVKG GARLNRLPAASAGDMVMA
Sbjct: 1 MSGSGASGNKFRMSLALPTGAVMNCCDNSGARNLYVLAVKGFGARLNRLPAASAGDMVMA 60
Query: 61 TVKKGKPELRKKVMPAIVVRQAKPWRRRDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK 120
TVKKGKPELRKKVMPAIVVRQA+PWRR+DGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK
Sbjct: 61 TVKKGKPELRKKVMPAIVVRQARPWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK 120
Query: 121 ECADLWPRIASNSGVVV 137
ECADLWPRIASNSGVVV
Sbjct: 121 ECADLWPRIASNSGVVV 137
>clus_CGOB_00022 c4 complement(1146644..1147015,1147227..1147268) [414 bp, 137 aa]
annotated by CGOB
Length = 137
Score = 261 bits (668), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 128/137 (93%), Positives = 133/137 (97%)
Query: 1 MSGSGASGNKFRMSLALPVGAVMNCADNSGARNLYVLAVKGTGARLNRLPAASAGDMVMA 60
MSGSGASGNKFRMSL LPVGAV+NC DNSGARNLY+LAVKG GARLNRLPAASAGDMVMA
Sbjct: 1 MSGSGASGNKFRMSLGLPVGAVVNCCDNSGARNLYILAVKGFGARLNRLPAASAGDMVMA 60
Query: 61 TVKKGKPELRKKVMPAIVVRQAKPWRRRDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK 120
TVKKGKPELRKKVMPAIVVRQ++PWRR+DG YLYFEDNAGVIVNPKGEMKGSAITGPVAK
Sbjct: 61 TVKKGKPELRKKVMPAIVVRQSRPWRRKDGTYLYFEDNAGVIVNPKGEMKGSAITGPVAK 120
Query: 121 ECADLWPRIASNSGVVV 137
ECADLWPRIASNSGVVV
Sbjct: 121 ECADLWPRIASNSGVVV 137
>DEHA2C04884g Chr3 (444246..444287,444544..444915) [414 bp, 137 aa] similar to
uniprot|P04451 Saccharomyces cerevisiae YER117W RPL23B
Protein component of the large (60S) ribosomal
subunit,identical to Rpl23Ap and has similarity to E.
coli L14 and rat L23 ribosomal proteins
Length = 137
Score = 261 bits (666), Expect = 4e-91, Method: Compositional matrix adjust. Identities = 127/137 (92%), Positives = 134/137 (97%)
Query: 1 MSGSGASGNKFRMSLALPVGAVMNCADNSGARNLYVLAVKGTGARLNRLPAASAGDMVMA 60
MSGSGASGNKFRMSL LPVGAV+NC DNSGARNLY+++VKG GARLNRLPAASAGDMVMA
Sbjct: 1 MSGSGASGNKFRMSLGLPVGAVVNCCDNSGARNLYIVSVKGFGARLNRLPAASAGDMVMA 60
Query: 61 TVKKGKPELRKKVMPAIVVRQAKPWRRRDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK 120
TVKKGKPELRKK+MPAIVVRQA+PWRR+DGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK
Sbjct: 61 TVKKGKPELRKKIMPAIVVRQARPWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK 120
Query: 121 ECADLWPRIASNSGVVV 137
ECADLWPRIASNSGVVV
Sbjct: 121 ECADLWPRIASNSGVVV 137
>YER117W Chr5 (396765..396806,397278..397649) [414 bp, 137 aa] Protein
component of the large (60S) ribosomal subunit,
identical to Rpl23Ap and has similarity to E. coli L14
and rat L23 ribosomal proteins
Length = 137
Score = 252 bits (644), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 121/137 (88%), Positives = 130/137 (94%)
Query: 1 MSGSGASGNKFRMSLALPVGAVMNCADNSGARNLYVLAVKGTGARLNRLPAASAGDMVMA 60
MSG+GA G KFR+SL LPVGA+MNCADNSGARNLY++AVKG+G+RLNRLPAAS GDMVMA
Sbjct: 1 MSGNGAQGTKFRISLGLPVGAIMNCADNSGARNLYIIAVKGSGSRLNRLPAASLGDMVMA 60
Query: 61 TVKKGKPELRKKVMPAIVVRQAKPWRRRDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK 120
TVKKGKPELRKKVMPAIVVRQAK WRRRDGV+LYFEDNAGVI NPKGEMKGSAITGPV K
Sbjct: 61 TVKKGKPELRKKVMPAIVVRQAKSWRRRDGVFLYFEDNAGVIANPKGEMKGSAITGPVGK 120
Query: 121 ECADLWPRIASNSGVVV 137
ECADLWPR+ASNSGVVV
Sbjct: 121 ECADLWPRVASNSGVVV 137
>YBL087C Chr2 complement(59818..60189,60694..60735) [414 bp, 137 aa] Protein
component of the large (60S) ribosomal subunit,
identical to Rpl23Bp and has similarity to E. coli L14
and rat L23 ribosomal proteins
Length = 137
Score = 252 bits (644), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 121/137 (88%), Positives = 130/137 (94%)
Query: 1 MSGSGASGNKFRMSLALPVGAVMNCADNSGARNLYVLAVKGTGARLNRLPAASAGDMVMA 60
MSG+GA G KFR+SL LPVGA+MNCADNSGARNLY++AVKG+G+RLNRLPAAS GDMVMA
Sbjct: 1 MSGNGAQGTKFRISLGLPVGAIMNCADNSGARNLYIIAVKGSGSRLNRLPAASLGDMVMA 60
Query: 61 TVKKGKPELRKKVMPAIVVRQAKPWRRRDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK 120
TVKKGKPELRKKVMPAIVVRQAK WRRRDGV+LYFEDNAGVI NPKGEMKGSAITGPV K
Sbjct: 61 TVKKGKPELRKKVMPAIVVRQAKSWRRRDGVFLYFEDNAGVIANPKGEMKGSAITGPVGK 120
Query: 121 ECADLWPRIASNSGVVV 137
ECADLWPR+ASNSGVVV
Sbjct: 121 ECADLWPRVASNSGVVV 137
>CANTEDRAFT_121943 c15 (598717..598746,599043..599414) [402 bp, 133 aa]
Length = 133
Score = 252 bits (643), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 122/132 (92%), Positives = 129/132 (97%)
Query: 6 ASGNKFRMSLALPVGAVMNCADNSGARNLYVLAVKGTGARLNRLPAASAGDMVMATVKKG 65
+SGNKFRMSL LPVGAV+NC DNSGARNLY+LAVKG GA+LNRLPAASAGDMVMATVKKG
Sbjct: 2 SSGNKFRMSLGLPVGAVLNCCDNSGARNLYILAVKGFGAKLNRLPAASAGDMVMATVKKG 61
Query: 66 KPELRKKVMPAIVVRQAKPWRRRDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAKECADL 125
KPELRKKVMPAIVVRQ++PWRR+DGVYLYFEDNAGVIVNPKGEMKGSAITGPVAKECADL
Sbjct: 62 KPELRKKVMPAIVVRQSRPWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAKECADL 121
Query: 126 WPRIASNSGVVV 137
WPRIASNSGVVV
Sbjct: 122 WPRIASNSGVVV 133
>CD36_62220 Chr6 complement(438921..439292,439791..439796) [378 bp, 125 aa]
Similar to S. cerevisiae RPL23A/B; spliced gene
Length = 125
Score = 248 bits (634), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 122/125 (97%), Positives = 125/125 (100%)
Query: 13 MSLALPVGAVMNCADNSGARNLYVLAVKGTGARLNRLPAASAGDMVMATVKKGKPELRKK 72
MSLALPVGAVMNCADNSGARNLYVLAVKGTGARLNRLPAA+AGDMVMATVKKGKPELRKK
Sbjct: 1 MSLALPVGAVMNCADNSGARNLYVLAVKGTGARLNRLPAAAAGDMVMATVKKGKPELRKK 60
Query: 73 VMPAIVVRQAKPWRRRDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAKECADLWPRIASN 132
VMPAIV+RQ+KPWRRRDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAKECADLWPRIASN
Sbjct: 61 VMPAIVIRQSKPWRRRDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAKECADLWPRIASN 120
Query: 133 SGVVV 137
SGVVV
Sbjct: 121 SGVVV 125
>PICST_89472 Chr5 complement(1698773..1699171) [399 bp, 132 aa] predicted
protein
Length = 132
Score = 66.6 bits (161), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 47/125 (37%), Positives = 66/125 (52%), Gaps = 18/125 (14%)
Query: 21 AVMNCADNSGARNLYVLAVKGTGARLNRLPAASAGDMVMATVKKGKP---EL-------- 69
+++N DNSGA+ + + V G L A GD + VKK +P E+
Sbjct: 6 SLLNVIDNSGAQVVECIKVLRHGP----LNFAKVGDEITVVVKKARPLQAEITGQSANNR 61
Query: 70 --RKKVMPAIVVRQAKPWRRRDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAKECADL-W 126
R+ + AIVVR P+RR DG + F+DNA V+VN GE G+ I+ VAKE DL +
Sbjct: 62 VKRRDICRAIVVRTKAPFRRPDGSVVRFDDNACVLVNKSGEPLGTRISSVVAKELRDLQY 121
Query: 127 PRIAS 131
+I S
Sbjct: 122 NKIVS 126
>CTRG_05235 c8 complement(11738..12136) [399 bp, 132 aa]
Length = 132
Score = 65.9 bits (159), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 45/125 (36%), Positives = 64/125 (51%), Gaps = 18/125 (14%)
Query: 21 AVMNCADNSGARNLYVLAVKGTGARLNRLPAASAGDMVMATVKKGKP---EL-------- 69
++N DNSGA+ + + V R A GD + VKK +P EL
Sbjct: 6 TMLNVIDNSGAQVVECIKV----LRHKPHSCAQIGDRITCVVKKARPPQQELAGQTSSNR 61
Query: 70 --RKKVMPAIVVRQAKPWRRRDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAKECADL-W 126
R+ + A+VVR P RR+DG + F+DNA V++N GE G+ I+ VAKE DL +
Sbjct: 62 VKRRDICQAVVVRTRAPLRRKDGSVVRFDDNACVLINKNGEPLGTRISSVVAKELKDLNY 121
Query: 127 PRIAS 131
+I S
Sbjct: 122 NKIVS 126
>CORT0E04890 c5 (1100060..1100470) [411 bp, 136 aa] S. cerevisiae homolog MRPL38
is structural constituent of mitochondrial large
ribosomal subunit
Length = 136
Score = 65.9 bits (159), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 44/129 (34%), Positives = 64/129 (49%), Gaps = 22/129 (17%)
Query: 21 AVMNCADNSGARNLYVLAVKGTGARLNRLPAASAGDMVMATVKKGKPE------------ 68
++N DNSGA+ + + V R N A GD + VK+ +P
Sbjct: 6 TLLNVIDNSGAQVVECIKV----LRHNPKSCAHIGDQITCVVKQARPTNVDSSSASSAAQ 61
Query: 69 -----LRKKVMPAIVVRQAKPWRRRDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAKECA 123
R+ + A+VVRQ P+RR DG + F+DNA V++N GE G+ I+ VAKE
Sbjct: 62 ASNRVKRRDICRAVVVRQRAPFRRPDGSVVRFDDNACVLINKNGEPLGTRISSVVAKELR 121
Query: 124 DL-WPRIAS 131
DL + +I S
Sbjct: 122 DLNYNKIVS 130
>CPAR2_302710 Chr3 (660989..661402) [414 bp, 137 aa] S. cerevisiae homolog MRPL38
has structural constituent of ribosome and localizes to
mitochondrial large ribosomal subunit
Length = 137
Score = 65.5 bits (158), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 44/130 (33%), Positives = 64/130 (49%), Gaps = 23/130 (17%)
Query: 21 AVMNCADNSGARNLYVLAVKGTGARLNRLPAASAGDMVMATVKKGKPE------------ 68
++N DNSGA+ + + V R N A GD + VK+ +P
Sbjct: 6 TLLNVIDNSGAQVVECIKV----LRHNPKSCAHIGDQITCVVKQARPTNVDASSSGSSSA 61
Query: 69 ------LRKKVMPAIVVRQAKPWRRRDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAKEC 122
R+ + A+VVRQ P+RR DG + F+DNA V++N GE G+ I+ VAKE
Sbjct: 62 QASNRVKRRDICRAVVVRQRAPFRRPDGSVVRFDDNACVLINKNGEPLGTRISSVVAKEL 121
Query: 123 ADL-WPRIAS 131
DL + +I S
Sbjct: 122 RDLNYNKIVS 131
>SPAPADRAFT_60997 c4 (16426..16815) [390 bp, 129 aa]
Length = 129
Score = 63.9 bits (154), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 46/122 (37%), Positives = 63/122 (51%), Gaps = 15/122 (12%)
Query: 21 AVMNCADNSGARNLYVLAVKGTGARLNRLPAASAGDMVMATVKKGKPEL----------R 70
+++N DNSGA L V +K R A GD + VK+ KP R
Sbjct: 6 SLLNVIDNSGA--LVVECIKV--LRHKPKSCAQIGDQITVVVKEAKPIADGTTSTNKVKR 61
Query: 71 KKVMPAIVVRQAKPWRRRDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAKECADL-WPRI 129
K + A+VVR P+RR DG + F+DNA V++N GE G+ I+ VAKE DL + +I
Sbjct: 62 KDICRAVVVRTRSPFRRPDGSMVKFDDNACVLINKNGEPLGTRISSVVAKELRDLQYNKI 121
Query: 130 AS 131
S
Sbjct: 122 VS 123
>LELG_03861 c5 (513468..513875) [408 bp, 135 aa]
Length = 135
Score = 63.5 bits (153), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 40/117 (34%), Positives = 58/117 (49%), Gaps = 20/117 (17%)
Query: 21 AVMNCADNSGARNLYVLAVKGTGARLNRLPAASAGDMVMATVKKGKPE------------ 68
++N DNSGA+ + + V G + A + GD++ VKK +PE
Sbjct: 6 TLLNVIDNSGAQIVECIKVSRHGPKT----AGNIGDIITCVVKKARPEPLGPGGKVSTQL 61
Query: 69 ----LRKKVMPAIVVRQAKPWRRRDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAKE 121
R+ V A++VRQ P RR DG + F+DNA V++N E G+ I VAKE
Sbjct: 62 ANKVKRRDVCKAVIVRQKSPLRRPDGSVIRFDDNACVLINKNKEPIGTRINSVVAKE 118
>CAWG_04408 c6 complement(6665..7063) [399 bp, 132 aa]
Length = 132
Score = 63.5 bits (153), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 42/120 (35%), Positives = 63/120 (52%), Gaps = 21/120 (17%)
Query: 21 AVMNCADNSGARNLYVLAVKGTGARLNRLPAASA--GDMVMATVKKGKP---EL------ 69
+++N DNSGA+ + + V L P + A GD + VK+ +P EL
Sbjct: 6 SLLNVIDNSGAQVVECIKV------LRHKPKSCAQIGDRITCVVKQARPLQQELTGQSST 59
Query: 70 ----RKKVMPAIVVRQAKPWRRRDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAKECADL 125
R+ + A+VVR P +R+DG + F+DNA V++N GE G+ I+ VAKE DL
Sbjct: 60 NRVKRRDICQAVVVRTRAPLKRKDGSVVRFDDNACVLINKNGEPLGTRISSVVAKELKDL 119
>orf19.5684 Chr5 complement(15077..15475) [399 bp, 132 aa] Predicted ORF in
Assemblies 19, 20 and 21
Length = 132
Score = 63.5 bits (153), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 42/120 (35%), Positives = 63/120 (52%), Gaps = 21/120 (17%)
Query: 21 AVMNCADNSGARNLYVLAVKGTGARLNRLPAASA--GDMVMATVKKGKP---EL------ 69
+++N DNSGA+ + + V L P + A GD + VK+ +P EL
Sbjct: 6 SLLNVIDNSGAQVVECIKV------LRHKPKSCAQIGDRITCVVKQARPLQQELTGQSST 59
Query: 70 ----RKKVMPAIVVRQAKPWRRRDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAKECADL 125
R+ + A+VVR P +R+DG + F+DNA V++N GE G+ I+ VAKE DL
Sbjct: 60 NRVKRRDICQAVVVRTRAPLKRKDGSVVRFDDNACVLINKNGEPLGTRISSVVAKELKDL 119
>CD36_50160 Chr5 complement(30040..30438) [399 bp, 132 aa] Similar to S.
cerevisiae MRPL38; In S. cerevisiae: appears as two
protein spots (YmL34 and YmL38) on two-dimensional SDS
gels
Length = 132
Score = 63.5 bits (153), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 42/120 (35%), Positives = 63/120 (52%), Gaps = 21/120 (17%)
Query: 21 AVMNCADNSGARNLYVLAVKGTGARLNRLPAASA--GDMVMATVKKGKP---EL------ 69
+++N DNSGA+ + + V L P + A GD + VK+ +P EL
Sbjct: 6 SLLNVIDNSGAQVVECIKV------LRHKPKSCAQIGDRITCVVKQARPLQQELTGQTST 59
Query: 70 ----RKKVMPAIVVRQAKPWRRRDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAKECADL 125
R+ + A+VVR P +R+DG + F+DNA V++N GE G+ I+ VAKE DL
Sbjct: 60 NRVKRRDICQAVVVRTRAPLKRKDGSVVRFDDNACVLINKNGEPLGTRISSVVAKELKDL 119
>CANTEDRAFT_103580 c9 complement(295023..295421) [399 bp, 132 aa]
Length = 132
Score = 58.9 bits (141), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 38/114 (33%), Positives = 60/114 (52%), Gaps = 17/114 (14%)
Query: 21 AVMNCADNSGARNLYVLAVKGTGARLNRLPAASAGDMVMATVKKGKP---EL-------- 69
+++N DNSGA+ + + V G R A GD + VK+ +P E+
Sbjct: 6 SLLNVIDNSGAQVVECIKVLRHGPR----NFAKVGDEITVVVKQARPLTAEITGLSANNR 61
Query: 70 --RKKVMPAIVVRQAKPWRRRDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAKE 121
R+ + A+VVR P+RR DG + F+DNA V+VN G+ G+ ++ VA+E
Sbjct: 62 VKRRDICRAVVVRTKAPFRRPDGSTIRFDDNACVLVNKNGDPLGTRVSSVVAQE 115
>CLUG_05805 c8 complement(463602..464000) [399 bp, 132 aa]
Length = 132
Score = 57.8 bits (138), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 38/114 (33%), Positives = 58/114 (50%), Gaps = 17/114 (14%)
Query: 21 AVMNCADNSGARNLYVLAVKGTGARLNRLPAASAGDMVMATVKKGKP---EL-------- 69
++N DNSGA+ + V G R A GD + +K+ +P E+
Sbjct: 6 TLLNVIDNSGAQVAECIKVLRHGPR----NFAKVGDEITVVIKQARPMNTEITGQSANNR 61
Query: 70 --RKKVMPAIVVRQAKPWRRRDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAKE 121
R+ + AIVVR P+RR DG + F+DNA V++N G+ G+ ++ VAKE
Sbjct: 62 VKRRDICRAIVVRTKAPFRRPDGSVVRFDDNACVLINKNGDPLGTRVSSVVAKE 115
>DEHA2B10296g Chr2 complement(812131..812529) [399 bp, 132 aa] highly similar to
uniprot|P35996 Saccharomyces cerevisiae YKL170W MRPL38
Mitochondrial ribosomal protein of the large subunit
Length = 132
Score = 53.9 bits (128), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 62/125 (49%), Gaps = 18/125 (14%)
Query: 21 AVMNCADNSGARNLYVLAVKGTGARLNRLPAASAGDMVMATVKKGKP---EL-------- 69
++N DNSGA+ + V G R A GD + VK+ + E+
Sbjct: 6 TLLNVIDNSGAQVAECIKVLRHGPR----NFAKVGDEITVVVKQARSMNKEITGQSANNR 61
Query: 70 --RKKVMPAIVVRQAKPWRRRDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAKECADL-W 126
R+ + AIVVR P+ R DG + F+DNA V++N G+ G+ ++ VAKE +L +
Sbjct: 62 VKRRDICRAIVVRTKSPFIRPDGSTVRFDDNACVLINKNGDPLGTRVSSVVAKELRELQY 121
Query: 127 PRIAS 131
+I S
Sbjct: 122 NKIVS 126
>PGUG_01682 c2 (884488..884886) [399 bp, 132 aa]
Length = 132
Score = 52.0 bits (123), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 18/125 (14%)
Query: 21 AVMNCADNSGARNLYVLAVKGTGARLNRLPAASAGDMVMATVKKGKP---EL-------- 69
++ DNSGA+ + V G A GD + VK+ + E+
Sbjct: 6 TLLKVIDNSGAQVAECIKVLRHGPH----NFAKVGDEITVVVKEARSLQSEITGQSANNR 61
Query: 70 --RKKVMPAIVVRQAKPWRRRDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAKECADL-W 126
R+ + A+VVR P+RR DG + F+DNA V++N G+ G+ ++ VAKE D+ +
Sbjct: 62 VKRRDICRAVVVRTKAPFRRPDGSTVRFDDNACVLINKNGDPLGTRVSSVVAKELRDMKY 121
Query: 127 PRIAS 131
+I S
Sbjct: 122 NKIVS 126
>CLUG_03431 c4 complement(501737..503080) [1344 bp, 447 aa]
Length = 447
Score = 31.2 bits (69), Expect = 0.55, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 27 DNSGARNLYVLAVKGTGARLNRLPAASAGDMVMATVKKGKPELRKKV 73
D N Y LA + T +RL+++ A + + ++K P++R+KV
Sbjct: 365 DTYSGFNFYPLASQPTRSRLDKIAPAHDDETIECSIKYYNPDIRRKV 411
>DEHA2D02926g Chr4 complement(249655..250923) [1269 bp, 422 aa] some similarities
with uniprot|P38590 Saccharomyces cerevisiae YNL053W
MSG5 Dual-specificity protein phosphatase
Length = 422
Score = 27.7 bits (60), Expect = 7.5, Method: Composition-based stats. Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 91 VYLYFEDNAGVIVNPKGEMKGSAITGPVAKECADLWPRIASNSG 134
+YLY + N G NPK ++ + VAKEC DL + +G
Sbjct: 259 IYLYSDPNHG---NPKIDINEFDLVINVAKECKDLSSEFDNKNG 299
Database: Seq/AA.fsa
Posted date: Feb 8, 2013 12:45 PM
Number of letters in database: 40,655,052
Number of sequences in database: 85,676
Lambda K H
0.317 0.133 0.391
Gapped Lambda K H 0.267 0.0410 0.140
Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 85676 Number of Hits to DB: 9,629,462 Number of extensions: 353020 Number of successful extensions: 639 Number of sequences better than 10.0: 30 Number of HSP's gapped: 638 Number of HSP's successfully gapped: 30 Length of query: 137 Length of database: 40,655,052 Length adjustment: 96 Effective length of query: 41 Effective length of database: 32,430,156 Effective search space: 1329636396 Effective search space used: 1329636396 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 59 (27.3 bits)